Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_001008-T1 | |
LLU|FUN_001009-T1 | |
LLU|FUN_001010-T1 | |
LLU|FUN_001011-T1 | |
LLU|FUN_001012-T1 | NEDD4 FAMILY INTERACTING PROTEIN 1/2 |
LLU|FUN_001013-T1 | AGAP001705-PA |
LLU|FUN_001014-T1 | |
LLU|FUN_001015-T1 | |
LLU|FUN_001016-T1 | FATTY ACID SYNTHASE |
LLU|FUN_001017-T1 | |
LLU|FUN_001018-T1 | ZINC FINGER HIT DOMAIN CONTAINING PROTEIN 1 |
LLU|FUN_001019-T1 | HISTONE ACETYLTRANSFERASE COMPLEX |
LLU|FUN_001020-T1 | |
LLU|FUN_001021-T1 | |
LLU|FUN_001022-T1 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
LLU|FUN_001023-T1 | |
LLU|FUN_001024-T1 | |
LLU|FUN_001025-T1 | HISTONE ACETYLTRANSFERASE COMPLEX |
LLU|FUN_001026-T1 | ZINC/IRON TRANSPORTER |
LLU|FUN_001027-T1 | UNCHARACTERIZED |
LLU|FUN_001028-T1 | LONGEVITY ASSURANCE FACTOR 1 LAG1 |
LLU|FUN_001029-T1 | |
LLU|FUN_001030-T1 | |
LLU|FUN_001031-T1 | |
LLU|FUN_001032-T1 | STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE |
LLU|FUN_001033-T1 | DENTIN SIALOPHOSPHOPROTEIN |
LLU|FUN_001034-T1 | |
LLU|FUN_001035-T1 | |
LLU|FUN_001036-T1 | |
LLU|FUN_001037-T1 | FRIZZLED |
LLU|FUN_001038-T1 | |
LLU|FUN_001039-T1 | ZGC:195170 |
LLU|FUN_001040-T1 | PUTATIVE-RELATED |
LLU|FUN_001041-T1 | |
LLU|FUN_001042-T1 | UNCHARACTERIZED |
LLU|FUN_001043-T1 | UNCHARACTERIZED |
LLU|FUN_001044-T1 | POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 |
LLU|FUN_001045-T1 | ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER |
LLU|FUN_001046-T1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 17 |
LLU|FUN_001047-T1 | AUTOCRINE PROLIFERATION REPRESSOR PROTEIN A |
LLU|FUN_001048-T1 | AUTOCRINE PROLIFERATION REPRESSOR PROTEIN A |
LLU|FUN_001049-T1 | AUTOCRINE PROLIFERATION REPRESSOR PROTEIN A |
LLU|FUN_001050-T1 | AUTOCRINE PROLIFERATION REPRESSOR PROTEIN A |
LLU|FUN_001051-T1 | AUTOCRINE PROLIFERATION REPRESSOR PROTEIN A |
LLU|FUN_001052-T1 | |
LLU|FUN_001053-T1 | AUTOCRINE PROLIFERATION REPRESSOR PROTEIN A |
LLU|FUN_001054-T1 | AUTOCRINE PROLIFERATION REPRESSOR PROTEIN A |
LLU|FUN_001055-T1 | AUTOCRINE PROLIFERATION REPRESSOR PROTEIN A |
LLU|FUN_001056-T1 | DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE |
LLU|FUN_001057-T1 | FMRFAMIDE RECEPTOR-RELATED |