About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_000705-T1CALCIUM RELEASE-ACTIVATED CALCIUM CHANNEL PROTEIN 1
LLU|FUN_000706-T1PHD/F-BOX CONTAINING PROTEIN
LLU|FUN_000707-T1
LLU|FUN_000708-T1
LLU|FUN_000709-T1EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
LLU|FUN_000710-T1
LLU|FUN_000711-T1
LLU|FUN_000712-T1SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS
LLU|FUN_000713-T1
LLU|FUN_000714-T1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
LLU|FUN_000715-T1
LLU|FUN_000716-T1C-TYPE LECTIN SUPERFAMILY MEMBER
LLU|FUN_000717-T1
LLU|FUN_000718-T1GLYCOPROTEIN HORMONE RECEPTOR
LLU|FUN_000719-T1
LLU|FUN_000720-T1
LLU|FUN_000721-T1LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED
LLU|FUN_000722-T1HEPATOCYTE GROWTH FACTOR-REGULATED TYROSINE KINASE SUBSTRATE
LLU|FUN_000723-T1
LLU|FUN_000724-T1UNCHARACTERIZED
LLU|FUN_000725-T1
LLU|FUN_000727-T1
LLU|FUN_000728-T1
LLU|FUN_000729-T1
LLU|FUN_000730-T1
LLU|FUN_000731-T1
LLU|FUN_000732-T1
LLU|FUN_000733-T1NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12
LLU|FUN_000734-T1RGD1565685 PROTEIN
LLU|FUN_000735-T1
LLU|FUN_000736-T1
LLU|FUN_000737-T1IRE1-RELATED
LLU|FUN_000738-T1NETRIN RECEPTOR UNC5
LLU|FUN_000739-T1
LLU|FUN_000740-T1
LLU|FUN_000741-T1GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2
LLU|FUN_000742-T1
LLU|FUN_000743-T1
LLU|FUN_000744-T1
LLU|FUN_000745-T1
LLU|FUN_000746-T1
LLU|FUN_000747-T1POLYCYSTIN FAMILY MEMBER
LLU|FUN_000748-T1POLYCYSTIN FAMILY MEMBER
LLU|FUN_000749-T1POLYCYSTIN FAMILY MEMBER
LLU|FUN_000750-T1VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
LLU|FUN_000751-T1UNCHARACTERIZED
LLU|FUN_000752-T1
LLU|FUN_000753-T1KRUEPPEL-LIKE TRANSCRIPTION FACTOR
LLU|FUN_000754-T1LD25575P
LLU|FUN_000755-T1ZINC FINGER PROTEIN DZIP1
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