About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia luymesi (Species)

Original Name

Lamellibrachia luymesi van der Land & Nørrevang, 1975

Key Reference Paper

1. VAN DER LAND J. The systematic position of Lamellibrachia (Annelida, Vestimentifera)[J]. Zeitschrift fur Zoologische Systematik und Evolutionsforschung, Sonderheft, 1975, 1975: 86-101. (Land et al., 1975)

Etymology

Not stated. Perhaps (from the locality information given) named after a research vessel named "Luymes", in turn named after the hydrographer Johan Lambertus Hendrikus Luymes

Distribution

continental slope off Guyana, S America, North Atlantic Ocean, 8.0167, -57.4° (8 1' N, 57 24' W) "Luymes" Guyana Shelf Exp. sta. 101, depth 500 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA51646795.80 373/24.140.1636.9238,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_000263-T1SERINE/THREONINE-PROTEIN KINASE
LLU|FUN_000264-T1PHOSPHOETHANOLAMINE METHYLTRANSFERASE
LLU|FUN_000265-T1MUCIN 4-RELATED
LLU|FUN_000266-T1-
LLU|FUN_000267-T1MUCIN 4-RELATED
LLU|FUN_000268-T1-
LLU|FUN_000269-T1RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING
LLU|FUN_000270-T1ATAXIN-7-LIKE PROTEIN 3
LLU|FUN_000271-T1CONTACTIN 5
LLU|FUN_000272-T1PROTEIN SIDEKICK
LLU|FUN_000273-T1SEPIAPTERIN REDUCTASE
LLU|FUN_000274-T1SEPIAPTERIN REDUCTASE
LLU|FUN_000275-T1MULTIPLE PDZ DOMAIN PROTEIN
LLU|FUN_000276-T1PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED
LLU|FUN_000277-T1PHOSPHATIDYLCHOLINE TRANSFER PROTEIN
LLU|FUN_000278-T1PHOSPHOMANNOMUTASE 45A
LLU|FUN_000279-T1DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER
LLU|FUN_000280-T1DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER
LLU|FUN_000281-T1NEUROTRANSMITTER GATED ION CHANNEL
LLU|FUN_000282-T1-

Results of comparison between Lamellibrachia luymesi and its nearshore relatives from the paper (Li et al., 2019)

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Annotation IDDescriptionTypeSubtypeGeneRatioEvolution TypeP-valueQ-value
PTHR44025LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEINPANTHER--expanded--
PTHR12011G-PROTEIN COUPLED RECEPTORPANTHER--expanded--
PTHR11177CHITINASEPANTHER--expanded--
PTHR28576PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEINPANTHER--expanded--
PTHR19325COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAININGPANTHER--expanded--
PTHR19325COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAININGPANTHER--expanded--
PTHR11119XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBERPANTHER--expanded--
PTHR10877POLYCYSTIN-RELATEDPANTHER--expanded--
PTHR13802MUCIN 4-RELATEDPANTHER--expanded--
PTHR10131TNF RECEPTOR ASSOCIATED FACTORPANTHER--expanded--
PTHR11908XANTHINE DEHYDROGENASEPANTHER--expanded--
PTHR11709MULTI-COPPER OXIDASEPANTHER--expanded--
PTHR14647GALACTOSE-3-O-SULFOTRANSFERASEPANTHER--expanded--
PTHR23033BETA1,3-GALACTOSYLTRANSFERASEPANTHER--expanded--
PTHR10283SOLUTE CARRIER FAMILY 13 MEMBERPANTHER--expanded--
PTHR24039FIBRILLINPANTHER--expanded--
PTHR14453PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEINPANTHER--expanded--
PTHR14453PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEINPANTHER--expanded--
PTHR24221ABC TRANSPORTERPANTHER--expanded--
PTHR24033FAMILY NOT NAMEDPANTHER--expanded--
PTHR10579CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATORPANTHER--expanded--
PTHR11039NEBULINPANTHER--expanded--
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