About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides48372ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
Paelopatides48373RED PROTEIN IK FACTOR CYTOKINE IK
Paelopatides48374UNCHARACTERIZED
Paelopatides48375PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47
Paelopatides48376SH3 DOMAIN-BINDING PROTEIN 5
Paelopatides48378PROTEIN CBG26694
Paelopatides48379SH3 DOMAIN-BINDING PROTEIN 5
Paelopatides48380SEGMENT POLARITY PROTEIN DISHEVELLED
Paelopatides48382PROTEIN CBG03580
Paelopatides48383D-GLUCURONYL C5-EPIMERASE
Paelopatides48384EF-HAND DOMAIN-CONTAINING PROTEIN D
Paelopatides48385HYALURONIDASE
Paelopatides48386DNA HELICASE RECQ FAMILY MEMBER
Paelopatides48387HYALURONIDASE
Paelopatides48388UBIQUITINATION FACTOR E4
Paelopatides48389-
Paelopatides4839052 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Paelopatides48391-
Paelopatides48392POLYCOMB GROUP PROTEIN
Paelopatides48393POLYCOMB GROUP PROTEIN
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