About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides48435GLYCOSYLTRANSFERASE
Paelopatides48436ZINC FINGER PROTEIN
Paelopatides48437SENTRIN/SUMO-SPECIFIC PROTEASE
Paelopatides48438-
Paelopatides48439-
Paelopatides48440CYCLIN-DEPENDENT KINASE 2-INTERACTING PROTEIN
Paelopatides48441-
Paelopatides48442-
Paelopatides48443REVERSE TRANSCRIPTASES
Paelopatides48444SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
Paelopatides48445L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides48446RIBOFLAVIN TRANSPORTER RIBJ
Paelopatides48447-
Paelopatides48448FI04643P-RELATED
Paelopatides48449-
Paelopatides48450-
Paelopatides48451NADH-UBIQUINONE OXIDOREDUCTASE 39 KDA SUBUNIT-RELATED
Paelopatides48452THIOREDOXIN-LIKE PROTEN 4A, 4B
Paelopatides48453-
Paelopatides48454TRANSMEMBRANE PROTEIN 246
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