About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides48495PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides48496PROTEIN CBG24663
Paelopatides48497CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 47
Paelopatides48498CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 47
Paelopatides48499-
Paelopatides48500-
Paelopatides48501-
Paelopatides48502COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED
Paelopatides48503L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides48504DYNEIN LIGHT CHAIN
Paelopatides48505GLYCOSIDASE FAMILY 31
Paelopatides48506MITOGEN-ACTIVATED PROTEIN KINASE
Paelopatides48507-
Paelopatides48508REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides48509-
Paelopatides48510PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides48511-
Paelopatides48512PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides48513GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN
Paelopatides48514-
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