About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides48556L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides48557APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
Paelopatides48558-
Paelopatides48559SCAVENGER RECEPTOR DOMAIN-CONTAINING
Paelopatides48560FI18240P1-RELATED
Paelopatides48561-
Paelopatides48562-
Paelopatides48563EGF-LIKE DOMAIN-CONTAINING PROTEIN
Paelopatides48576-
Paelopatides48577ADAPTIN, ALPHA/GAMMA/EPSILON
Paelopatides48578ADAPTIN, ALPHA/GAMMA/EPSILON
Paelopatides48579TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
Paelopatides48580TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
Paelopatides48581ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides48582SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides48583N-LYSINE METHYLTRANSFERASE KMT5A
Paelopatides48584SEC61 SUBUNIT BETA
Paelopatides48585GLYCEROL-3-PHOSPHATE DEHYDROGENASE
Paelopatides48586GLYCEROL-3-PHOSPHATE DEHYDROGENASE
Paelopatides48587TRANSMEMBRANE PROTEIN 237
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