About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides48475-
Paelopatides48476-
Paelopatides48477-
Paelopatides48478-
Paelopatides48479KAZRIN-RELATED
Paelopatides48480CYTOCHROME P450 26
Paelopatides48481SI:CH73-250A16.5-RELATED
Paelopatides48482MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides48483-
Paelopatides48484OLIGORIBONUCLEASE, MITOCHONDRIAL
Paelopatides48485OLIGORIBONUCLEASE, MITOCHONDRIAL
Paelopatides48486OLIGORIBONUCLEASE, MITOCHONDRIAL
Paelopatides48487-
Paelopatides48488CXC2 DOMAIN-CONTAINING PROTEIN
Paelopatides48489-
Paelopatides48490-
Paelopatides48491LEUCINE-RICH REPEAT-CONTAINING PROTEIN 71
Paelopatides48492WSCD FAMILY MEMBER CG9164
Paelopatides48493PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides48494PROTEIN, PUTATIVE-RELATED
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