About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides48622-
Paelopatides48623CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED
Paelopatides48624ENDONUCLEASE-RELATED
Paelopatides48625T-SNARE COILED-COIL HOMOLOGY DOMAIN-CONTAINING PROTEIN
Paelopatides48626-
Paelopatides48627NETRIN RECEPTOR UNC5
Paelopatides48628REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides48629REVERSE TRANSCRIPTASES
Paelopatides48630AAA DOMAIN-CONTAINING
Paelopatides48631-
Paelopatides48632TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2
Paelopatides48633SPONDIN
Paelopatides48634SPONDIN
Paelopatides48635SPONDIN
Paelopatides48636PROTEIN CBG26694
Paelopatides48637MYELOID LEUKEMIA FACTOR
Paelopatides48638-
Paelopatides48639CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides48640REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides48641FIBRILLIN-RELATED
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