About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides48662DYNEIN INTERMEDIATE CHAIN
Paelopatides48663AP-5 COMPLEX SUBUNIT ZETA-1
Paelopatides48664DUF3504 DOMAIN-CONTAINING PROTEIN
Paelopatides48665AP-5 COMPLEX SUBUNIT ZETA-1
Paelopatides48666METEORIN-LIKE PROTEIN
Paelopatides48667-
Paelopatides48668METEORIN-LIKE PROTEIN
Paelopatides48669PROLYL HYDROXYLASE-RELATED
Paelopatides48670PROLYL HYDROXYLASE-RELATED
Paelopatides48671N-TERMINAL ASPARAGINE AMIDOHYDROLASE
Paelopatides48672PUTATIVE-RELATED
Paelopatides48673-
Paelopatides48674DPY-19-LIKE 1, LIKE (H. SAPIENS)
Paelopatides48675SERINE/THREONINE-PROTEIN KINASE
Paelopatides48676-
Paelopatides48677DOUBLECORTIN DOMAIN CONTAINING 2
Paelopatides48678-
Paelopatides48679ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides48681UNCHARACTERIZED
Paelopatides48682CXC DOMAIN-CONTAINING PROTEIN-RELATED
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