About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides48312LEUCINE RICH REPEAT FAMILY PROTEIN
Paelopatides48313CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 10
Paelopatides48314CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 10
Paelopatides4831539S RIBOSOMAL PROTEIN L45, MITOCHONDRIAL
Paelopatides48316PROTEIN C7ORF21
Paelopatides48317ATP SYNTHASE LIPID-BINDING PROTEIN, MITOCHONDRIAL
Paelopatides48318JUXTAPOSED WITH ANOTHER ZINC FINGER PROTEIN 1
Paelopatides48319CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 3
Paelopatides48320CARBOXYLESTERASE
Paelopatides48321ACETYLCHOLINESTERASE
Paelopatides48322CARBOXYLESTERASE
Paelopatides48323ACETYLCHOLINESTERASE
Paelopatides48324ACETYLCHOLINESTERASE
Paelopatides48325CARBOXYLESTERASE
Paelopatides48326GTP-BINDING PROTEIN ALPHA SUBUNIT
Paelopatides48327-
Paelopatides48328SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER
Paelopatides48329FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides48330-
Paelopatides48331-
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