About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides48269-
Paelopatides48270-
Paelopatides48271REVERSE TRANSCRIPTASES
Paelopatides48272PROTEIN CBG24663
Paelopatides48274ENDONUCLEASE-RELATED
Paelopatides48275POL PROTEIN
Paelopatides48276PARANEOPLASTIC ANTIGEN
Paelopatides48277NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Paelopatides48278REVERSE TRANSCRIPTASES
Paelopatides48279-
Paelopatides48280MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides48281-
Paelopatides48282PEPTIDE DEFORMYLASE
Paelopatides48283-
Paelopatides48284BONUS, ISOFORM C-RELATED
Paelopatides48285BONUS, ISOFORM C-RELATED
Paelopatides48286UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Paelopatides48287-
Paelopatides48288HOMEOBOX PROTEIN EMX-RELATED
Paelopatides48289GMP REDUCTASE
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