About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides48146-
Paelopatides48147REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides48148L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides48149OXIDOREDUCTASES
Paelopatides48150OXIDOREDUCTASES
Paelopatides4815150S RIBOSOMAL PROTEIN L21
Paelopatides48152-
Paelopatides4815315-HYDROXYPROSTAGLANDIN DEHYDROGENASE [NAD(+)]
Paelopatides48154-
Paelopatides48155GTPASE, IMAP FAMILY MEMBER-RELATED
Paelopatides48156N-ACETYLGALACTOSAMINYLTRANSFERASE
Paelopatides48157ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE
Paelopatides48158-
Paelopatides48159E3 UBIQUITIN-PROTEIN LIGASE MARCH4-LIKE
Paelopatides48160-
Paelopatides48161RIBOSOMAL S SUBUNIT
Paelopatides48162-
Paelopatides48163RIBOSOMAL S SUBUNIT
Paelopatides48164RIBOSOMAL S SUBUNIT
Paelopatides48165RIBOSOMAL S SUBUNIT
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