About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides48038GALACTOSE-3-O-SULFOTRANSFERASE
Paelopatides48039GALACTOSE-3-O-SULFOTRANSFERASE
Paelopatides48040GALACTOSE-3-O-SULFOTRANSFERASE
Paelopatides48041GALACTOSE-3-O-SULFOTRANSFERASE
Paelopatides48042REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides48043L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides48044SULFATE TRANSPORTER
Paelopatides48045-
Paelopatides48046ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides48047PROTEIN CBG26694
Paelopatides48048PROTEIN CBG26694
Paelopatides48049PROTEIN CBG04600
Paelopatides48050-
Paelopatides48051REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides48052VESICLE-TRAFFICKING PROTEIN SEC22B
Paelopatides48053UNCHARACTERIZED
Paelopatides48054SYNAPTIC ADHESION-LIKE MOLECULE SALM
Paelopatides48055ACYL-MALONYL CONDENSING ENZYME-RELATED
Paelopatides48056ACYL-MALONYL CONDENSING ENZYME-RELATED
Paelopatides48057ACYL-MALONYL CONDENSING ENZYME-RELATED
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