Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s017.g0448.t1 | LEUCOKININ RECEPTOR-RELATED |
| Lsat_s017.g0449.t1 | |
| Lsat_s017.g0450.t1 | FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED |
| Lsat_s017.g0451.t1 | NASOPHARYNGEAL EPITHELIUM SPECIFIC PROTEIN 1 |
| Lsat_s017.g0452.t1 | MITOCHONDRIAL RIBOSOME PROTEIN L39/PROLYL-TRNA LIGASE FAMILY MEMBER |
| Lsat_s017.g0453.t1 | |
| Lsat_s017.g0454.t1 | |
| Lsat_s017.g0455.t1 | SLEI FAMILY PROTEIN |
| Lsat_s017.g0456.t1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| Lsat_s017.g0457.t1 | MUCIN-17 |
| Lsat_s017.g0458.t1 | |
| Lsat_s017.g0459.t1 | VESICLE PROTEIN SORTING-ASSOCIATED |
| Lsat_s017.g0460.t1 | POLYCYSTIN FAMILY MEMBER |
| Lsat_s017.g0461.t1 | |
| Lsat_s017.g0462.t1 | AMP DEAMINASE |
| Lsat_s017.g0463.t1 | |
| Lsat_s017.g0464.t1 | F-BOX ONLY PROTEIN 6-LIKE PROTEIN |
| Lsat_s017.g0465.t1 | |
| Lsat_s017.g0466.t1 | |
| Lsat_s017.g0467.t1 | PROTEIN VAV |
| Lsat_s017.g0468.t1 | RAB9 EFFECTOR PROTEIN WITH KELCH MOTIFS |
| Lsat_s017.g0469.t1 | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS |
| Lsat_s017.g0470.t1 | UNCHARACTERIZED |
| Lsat_s017.g0471.t1 | ZINC FINGER PROTEIN |
| Lsat_s017.g0472.t1 | UNCHARACTERIZED |
| Lsat_s017.g0473.t1 | UDP-N-ACETYLGLUCOSAMINE--DOLICHYL-PHOSPHATE N-ACETYLGLUCOSAMINEPHOSPHOTRANSFERASE |
| Lsat_s017.g0474.t1 | |
| Lsat_s017.g0475.t1 | - |
| Lsat_s017.g0476.t1 | PROTEIN ODR-4 HOMOLOG |
| Lsat_s017.g0477.t1 | ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN |
| Lsat_s017.g0478.t1 | COILED-COIL ALPHA-HELICAL ROD PROTEIN 1 |
| Lsat_s017.g0479.t1 | MYOMEGALIN |
| Lsat_s017.g0480.t1 | |
| Lsat_s017.g0481.t1 | USP DOMAIN-CONTAINING PROTEIN |
| Lsat_s017.g0482.t1 | RHOMBOID-RELATED PROTEIN |
| Lsat_s017.g0483.t1 | SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 |
| Lsat_s017.g0484.t1 | HAMARTIN |
| Lsat_s017.g0485.t1 | |
| Lsat_s018.g0001.t1 | DEDICATOR OF CYTOKINESIS DOCK |
| Lsat_s018.g0002.t1 | |
| Lsat_s018.g0003.t1 | |
| Lsat_s018.g0004.t1 | LOW-DENSITY LIPOPROTEIN RECEPTOR CLASS A DOMAIN-CONTAINING PROTEIN 2 |
| Lsat_s018.g0005.t1 | RETICULOCALBIN |
| Lsat_s018.g0006.t1 | |
| Lsat_s018.g0007.t1 | |
| Lsat_s018.g0008.t1 | |
| Lsat_s018.g0009.t1 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST |
| Lsat_s018.g0010.t1 | |
| Lsat_s018.g0011.t1 | |
| Lsat_s018.g0012.t1 |
