Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s018.g0013.t1 | |
| Lsat_s018.g0014.t1 | |
| Lsat_s018.g0015.t1 | METHYLTRANSFERASE-RELATED |
| Lsat_s018.g0016.t1 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Lsat_s018.g0017.t1 | |
| Lsat_s018.g0018.t1 | METHYLTRANSFERASE-RELATED |
| Lsat_s018.g0019.t1 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
| Lsat_s018.g0020.t1 | |
| Lsat_s018.g0021.t1 | PARTITIONING DEFECTIVE 3 RELATED |
| Lsat_s018.g0022.t1 | PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1 |
| Lsat_s018.g0023.t1 | TELOMERASE-BINDING PROTEIN P23 HSP90 CO-CHAPERONE |
| Lsat_s018.g0024.t1 | AMINO ACID TRANSPORTER |
| Lsat_s018.g0025.t1 | |
| Lsat_s018.g0026.t1 | AMINO ACID TRANSPORTER |
| Lsat_s018.g0027.t1 | AMINO ACID TRANSPORTER |
| Lsat_s018.g0028.t1 | AMINO ACID TRANSPORTER |
| Lsat_s018.g0029.t1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| Lsat_s018.g0030.t1 | - |
| Lsat_s018.g0031.t1 | ZINC FINGER AND BTB DOMAIN-CONTAINING |
| Lsat_s018.g0032.t1 | |
| Lsat_s018.g0033.t1 | AGAP004733-PA |
| Lsat_s018.g0034.t1 | ZINC FINGER PROTEIN |
| Lsat_s018.g0035.t1 | PR DOMAIN ZINC FINGER PROTEIN |
| Lsat_s018.g0036.t1 | IRE1-RELATED |
| Lsat_s018.g0037.t1 | IRE1-RELATED |
| Lsat_s018.g0038.t1 | |
| Lsat_s018.g0039.t1 | |
| Lsat_s018.g0040.t1 | FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED |
| Lsat_s018.g0041.t1 | PROTEASOME REGULATOR PA28 |
| Lsat_s018.g0042.t1 | ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN |
| Lsat_s018.g0043.t1 | |
| Lsat_s018.g0044.t1 | TRANSFERASE, PUTATIVE-RELATED |
| Lsat_s018.g0045.t1 | DEOXYNUCLEOSIDE KINASE |
| Lsat_s018.g0046.t1 | |
| Lsat_s018.g0047.t1 | |
| Lsat_s018.g0048.t1 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING |
| Lsat_s018.g0049.t1 | |
| Lsat_s018.g0050.t1 | |
| Lsat_s018.g0051.t1 | TRANS-SULFURATION ENZYME FAMILY MEMBER |
| Lsat_s018.g0052.t1 | |
| Lsat_s018.g0053.t1 | |
| Lsat_s018.g0054.t1 | |
| Lsat_s018.g0055.t1 | KINESIN-RELATED PROTEIN 6 |
| Lsat_s018.g0056.t1 | DNA LIGASE 4 |
| Lsat_s018.g0057.t1 | TRANSPORTIN 3 AND IMPORTIN 13 |
| Lsat_s018.g0058.t1 | MUCIN-19 |
| Lsat_s018.g0059.t1 | MENORIN (DENDRITIC BRANCHING PROTEIN) |
| Lsat_s018.g0060.t1 | LEUCINE-RICH REPEAT-CONTAINING PROTEIN 72 |
| Lsat_s018.g0061.t1 | AGAP001331-PA-RELATED |
| Lsat_s018.g0062.t1 |
