Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s018.g0113.t1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| Lsat_s018.g0114.t1 | PERIOSTIN-RELATED |
| Lsat_s018.g0115.t1 | ANKYRIN REPEAT FAMILY PROTEIN |
| Lsat_s018.g0116.t1 | DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED |
| Lsat_s018.g0117.t1 | |
| Lsat_s018.g0118.t1 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
| Lsat_s018.g0119.t1 | |
| Lsat_s018.g0120.t1 | PROTEASE FAMILY S9B,C DIPEPTIDYL-PEPTIDASE IV-RELATED |
| Lsat_s018.g0121.t1 | CGI-41 METHYLTRANSFERASE |
| Lsat_s018.g0122.t1 | CHROMATIN TARGET OF PRMT1 PROTEIN |
| Lsat_s018.g0123.t1 | MEIOSIS-SPECIFIC NUCLEAR STRUCTURAL PROTEIN 1 |
| Lsat_s018.g0124.t1 | YL-1 PROTEIN TRANSCRIPTION FACTOR-LIKE 1 |
| Lsat_s018.g0125.t1 | CENTROMERE PROTEIN C |
| Lsat_s018.g0126.t1 | UNCHARACTERIZED |
| Lsat_s018.g0127.t1 | ADP RIBOSYLATION FACTOR-RELATED |
| Lsat_s018.g0128.t1 | MULTIPLE PDZ DOMAIN PROTEIN |
| Lsat_s018.g0129.t1 | BETA-AMYLOID BINDING PROTEIN-RELATED |
| Lsat_s018.g0130.t1 | UV EXCISION REPAIR PROTEIN RAD23 |
| Lsat_s018.g0131.t1 | UNCHARACTERIZED |
| Lsat_s018.g0132.t1 | RAB6A-GEF COMPLEX PARTNER PROTEIN 1 |
| Lsat_s018.g0133.t1 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
| Lsat_s018.g0134.t1 | - |
| Lsat_s018.g0135.t1 | - |
| Lsat_s018.g0136.t1 | AMYLOID PROTEIN-BINDING PROTEIN 2 |
| Lsat_s018.g0137.t1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
| Lsat_s018.g0138.t1 | |
| Lsat_s018.g0139.t1 | ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT |
| Lsat_s018.g0140.t1 | PROTEIN SHORTAGE IN CHIASMATA 1 ORTHOLOG |
| Lsat_s018.g0141.t1 | |
| Lsat_s018.g0142.t1 | |
| Lsat_s018.g0143.t1 | |
| Lsat_s018.g0144.t1 | TRANSMEMBRANE PROTEIN CCDC163 |
| Lsat_s018.g0145.t1 | 24-DEHYDROCHOLESTEROL REDUCTASE |
| Lsat_s018.g0146.t1 | E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED |
| Lsat_s018.g0147.t1 | E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED |
| Lsat_s018.g0148.t1 | NUCLEOTIDE KINASE |
| Lsat_s018.g0149.t1 | TAL1 SCL INTERRUPTING LOCUS |
| Lsat_s018.g0150.t1 | CRSP70 |
| Lsat_s018.g0151.t1 | SYNTAXIN |
| Lsat_s018.g0152.t1 | CARRIER DOMAIN-CONTAINING PROTEIN |
| Lsat_s018.g0153.t1 | BETA TRANSDUCIN-RELATED PROTEIN |
| Lsat_s018.g0154.t1 | |
| Lsat_s018.g0155.t1 | UNCHARACTERIZED |
| Lsat_s018.g0156.t1 | |
| Lsat_s018.g0157.t1 | UNCHARACTERIZED |
| Lsat_s018.g0158.t1 | OSMOSIS RESPONSIVE FACTOR |
| Lsat_s018.g0159.t1 | |
| Lsat_s018.g0160.t1 | CARNITINE O-ACYLTRANSFERASE |
| Lsat_s018.g0161.t1 | ZINC FINGER PROTEIN |
| Lsat_s018.g0162.t1 | GLYCOSYL TRANSFERASE-RELATED |
