About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia satsuma (Species)

Original Name

Lamellibrachia satsuma Miura, 1997

Key Reference Paper

1. Miura T. Lamellibrachia satsuma, a new species of vestimentiferan worms (Annelida: Pogonophora) from a shallow hydrothermal vent in Kagoshima Bay, Japan[J]. Proceedings of the Biological Society of Washington, 1997, 110: 447-456. (Miura et al., 1997)

Distribution

The species has been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m (3,840 ft) depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50 8,074/6,60040.2-27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s006.g0251.t1CENTRIOLAR COILED-COIL PROTEIN OF 110 KDA
Lsat_s006.g0252.t1ATP-BINDING CASSETTE SUB-FAMILY C
Lsat_s006.g0253.t1UBIQUITIN LIGASE SPECIFICITY FACTOR/HREP PROTEIN
Lsat_s006.g0254.t1DYNEIN HEAVY CHAIN
Lsat_s006.g0255.t1DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11
Lsat_s006.g0256.t1UPF0602 PROTEIN C4ORF47
Lsat_s006.g0257.t1-
Lsat_s006.g0258.t1ENDONUCLEASE IV ENDODEOXYRIBONUCLEASE IV
Lsat_s006.g0259.t1DIACYLGLYCEROL LIPASE HOMOLOG-RELATED
Lsat_s006.g0260.t1GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED
Lsat_s006.g0261.t1BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 2
Lsat_s006.g0262.t1E3 UBIQUITIN-PROTEIN LIGASE PRAJA
Lsat_s006.g0263.t1RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN
Lsat_s006.g0264.t1INOSITOL POLYPHOSPHATE KINASE
Lsat_s006.g0265.t1DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL
Lsat_s006.g0266.t1LEUCINE RICH REPEAT FAMILY PROTEIN
Lsat_s006.g0267.t1-
Lsat_s006.g0268.t1ADIPOR/PROGESTIN RECEPTOR-RELATED
Lsat_s006.g0269.t1-
Lsat_s006.g0270.t1PROLYL HYDROXYLASE-RELATED
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