Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s017.g0248.t1 | SCHLAFEN |
| Lsat_s017.g0249.t1 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
| Lsat_s017.g0250.t1 | UNCHARACTERIZED |
| Lsat_s017.g0251.t1 | VALYL-TRNA SYNTHETASES |
| Lsat_s017.g0252.t1 | |
| Lsat_s017.g0253.t1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| Lsat_s017.g0254.t1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Lsat_s017.g0255.t1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| Lsat_s017.g0256.t1 | |
| Lsat_s017.g0257.t1 | |
| Lsat_s017.g0258.t1 | IMMEDIATE EARLY RESPONSE GENE |
| Lsat_s017.g0259.t1 | |
| Lsat_s017.g0260.t1 | |
| Lsat_s017.g0261.t1 | STAR-RELATED LIPID TRANSFER PROTEIN 9 |
| Lsat_s017.g0262.t1 | CUBILIN-LIKE PROTEIN |
| Lsat_s017.g0263.t1 | JANUS-A/JANUS-B |
| Lsat_s017.g0264.t1 | F-BOX ONLY PROTEIN 38 |
| Lsat_s017.g0265.t1 | |
| Lsat_s017.g0266.t1 | |
| Lsat_s017.g0267.t1 | DNA-REPAIR PROTEIN XRCC1 |
| Lsat_s017.g0268.t1 | HYPOXIA-INDUCBILE GENE 1 HIG1 -RELATED |
| Lsat_s017.g0269.t1 | |
| Lsat_s017.g0270.t1 | |
| Lsat_s017.g0271.t1 | NUCLEAR HORMONE RECEPTOR |
| Lsat_s017.g0272.t1 | MICROSOMAL PROSTAGLANDIN E SYNTHASE-2 |
| Lsat_s017.g0273.t1 | ATP-DEPENDENT RNA HELICASE DBP3 |
| Lsat_s017.g0274.t1 | |
| Lsat_s017.g0275.t1 | KH DOMAIN CONTAINING RNA BINDING PROTEIN |
| Lsat_s017.g0276.t1 | |
| Lsat_s017.g0277.t1 | |
| Lsat_s017.g0278.t1 | AMINOTRANSFERASE |
| Lsat_s017.g0279.t1 | |
| Lsat_s017.g0280.t1 | DELTEX-RELATED |
| Lsat_s017.g0281.t1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| Lsat_s017.g0282.t1 | SURFEIT LOCUS PROTEIN 2 |
| Lsat_s017.g0283.t1 | |
| Lsat_s017.g0284.t1 | |
| Lsat_s017.g0285.t1 | RIBOSOMAL PROTEIN S7 |
| Lsat_s017.g0286.t1 | UNCHARACTERIZED |
| Lsat_s017.g0287.t1 | SMG-7 SUPPRESSOR WITH MORPHOLOGICAL EFFECT ON GENITALIA PROTEIN 7 |
| Lsat_s017.g0288.t1 | LAMIN DM0-RELATED |
| Lsat_s017.g0289.t1 | |
| Lsat_s017.g0290.t1 | |
| Lsat_s017.g0291.t1 | |
| Lsat_s017.g0292.t1 | ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 7 |
| Lsat_s017.g0293.t1 | LAMIN DM0-RELATED |
| Lsat_s017.g0294.t1 | RRNA METHYLTRANSFERASE 3, |
| Lsat_s017.g0295.t1 | CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR |
| Lsat_s017.g0296.t1 | CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR |
| Lsat_s017.g0297.t1 |
