About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia satsuma (Species)

Original Name

Lamellibrachia satsuma Miura, 1997

Key Reference Paper

1. Miura T. Lamellibrachia satsuma, a new species of vestimentiferan worms (Annelida: Pogonophora) from a shallow hydrothermal vent in Kagoshima Bay, Japan[J]. Proceedings of the Biological Society of Washington, 1997, 110: 447-456. (Miura et al., 1997)

Distribution

The species has been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m (3,840 ft) depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50 8,074/6,60040.2-27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s006.g0051.t1VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED
Lsat_s006.g0052.t160S RIBOSOMAL PROTEIN L34
Lsat_s006.g0053.t1DIHYDRODIPICOLINATE SYNTHASE
Lsat_s006.g0054.t1-
Lsat_s006.g0055.t1TEKTIN
Lsat_s006.g0056.t1NUCLEOTIDE-BINDING PROTEIN NBP35 YEAST -RELATED
Lsat_s006.g0057.t1SIMILAR TO PREFERENTIALLY EXPRESSED ANTIGEN IN MELANOMA-LIKE 3
Lsat_s006.g0058.t1OXIDOREDUCTASE-LIKE DOMAIN-CONTAINING PROTEIN 1
Lsat_s006.g0059.t1UNCHARACTERIZED
Lsat_s006.g0060.t1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Lsat_s006.g0061.t1DEOXYNUCLEOSIDE KINASE
Lsat_s006.g0062.t1RIBOSOMAL PROTEIN S7
Lsat_s006.g0063.t1ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED
Lsat_s006.g0064.t1RUN AND FYVE DOMAIN-CONTAINING PROTEIN 2-LIKE PROTEIN
Lsat_s006.g0065.t1BETA TRANSDUCIN-RELATED PROTEIN
Lsat_s006.g0066.t1RIBONUCLEOPROTEIN RB97D
Lsat_s006.g0067.t1HEREGULIN-NEUREGULIN FAMILY MEMBER
Lsat_s006.g0068.t1-
Lsat_s006.g0069.t1P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN
Lsat_s006.g0070.t1-
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