Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s017.g0198.t1 | PROTEIN FAM47B |
| Lsat_s017.g0199.t1 | |
| Lsat_s017.g0200.t1 | |
| Lsat_s017.g0201.t1 | DOCKING PROTEIN RELATED |
| Lsat_s017.g0202.t1 | UNCHARACTERIZED |
| Lsat_s017.g0203.t1 | NETRIN/LAMININ-RELATED |
| Lsat_s017.g0204.t1 | NEPHRIN |
| Lsat_s017.g0205.t1 | |
| Lsat_s017.g0206.t1 | TORSIN-1A-INTERACTING PROTEIN |
| Lsat_s017.g0207.t1 | DNA-DIRECTED RNA POLYMERASES III 80 KDA POLYPEPTIDE RNA POLYMERASE III SUBUNIT 5 |
| Lsat_s017.g0208.t1 | UPF0449 PROTEIN C19ORF25 |
| Lsat_s017.g0209.t1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 151 |
| Lsat_s017.g0210.t1 | |
| Lsat_s017.g0211.t1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| Lsat_s017.g0212.t1 | UNCHARACTERIZED |
| Lsat_s017.g0213.t1 | LEUKOCYTE RECEPTOR CLUSTER MEMBER 9 |
| Lsat_s017.g0214.t1 | FI14130P |
| Lsat_s017.g0215.t1 | |
| Lsat_s017.g0216.t1 | |
| Lsat_s017.g0217.t1 | |
| Lsat_s017.g0218.t1 | |
| Lsat_s017.g0219.t1 | URIDINE KINASE |
| Lsat_s017.g0220.t1 | SCY1-RELATED S/T PROTEIN KINASE-LIKE |
| Lsat_s017.g0221.t1 | TRANSMEMBRANE CHANNEL-RELATED |
| Lsat_s017.g0222.t1 | POLYCOMB-LIKE TRANSCRIPTION FACTOR |
| Lsat_s017.g0223.t1 | |
| Lsat_s017.g0224.t1 | |
| Lsat_s017.g0225.t1 | NEPHRIN |
| Lsat_s017.g0226.t1 | |
| Lsat_s017.g0227.t1 | PAIRED IMMUNOGLOBULIN-LIKE TYPE 2 RECEPTOR |
| Lsat_s017.g0228.t1 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Lsat_s017.g0229.t1 | |
| Lsat_s017.g0230.t1 | PAIRED IMMUNOGLOBULIN-LIKE TYPE 2 RECEPTOR |
| Lsat_s017.g0231.t1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| Lsat_s017.g0232.t1 | NF-KAPPA-B INHIBITOR ALPHA |
| Lsat_s017.g0233.t1 | NF-KAPPA-B INHIBITOR ALPHA |
| Lsat_s017.g0234.t1 | SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA |
| Lsat_s017.g0235.t1 | TRIACYLGLYCEROL LIPASE |
| Lsat_s017.g0236.t1 | WD REPEAT DOMAIN-CONTAINING FAMILY |
| Lsat_s017.g0237.t1 | SMALL SEVEN TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN |
| Lsat_s017.g0238.t1 | PROTEIN FLATTOP |
| Lsat_s017.g0239.t1 | |
| Lsat_s017.g0240.t1 | MEMBRANE-SPANNING 4-DOMAINS SUBFAMILY A MS4A -RELATED |
| Lsat_s017.g0241.t1 | |
| Lsat_s017.g0242.t1 | |
| Lsat_s017.g0243.t1 | MEMBRANE-SPANNING 4-DOMAINS SUBFAMILY A MS4A -RELATED |
| Lsat_s017.g0244.t1 | TRICHOHYALIN-RELATED |
| Lsat_s017.g0245.t1 | GENE, 49416-RELATED |
| Lsat_s017.g0246.t1 | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20-RELATED |
| Lsat_s017.g0247.t1 | METALLOPROTEASE TLDD |
