About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50%27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s016.g0424.t1FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED
Lsat_s016.g0425.t1
Lsat_s016.g0426.t1
Lsat_s017.g0001.t1
Lsat_s017.g0002.t1
Lsat_s017.g0003.t1
Lsat_s017.g0004.t1
Lsat_s017.g0005.t1
Lsat_s017.g0006.t1
Lsat_s017.g0007.t1TRANSMEMBRANE PROTEIN 254
Lsat_s017.g0008.t1LYSOPHOSPHOLIPASE-RELATED
Lsat_s017.g0009.t1STRIATED MUSCLE ACTIVATOR OF RHO-DEPENDENT SIGNALING-RELATED
Lsat_s017.g0010.t1MITOCHONDRIAL RIBOSOMAL PROTEIN S5
Lsat_s017.g0011.t1
Lsat_s017.g0012.t1UNCHARACTERIZED
Lsat_s017.g0013.t1
Lsat_s017.g0014.t1HEMOGLOBINASE FAMILY MEMBER
Lsat_s017.g0015.t1GLYCOPROTEIN HORMONE BETA CHAIN
Lsat_s017.g0016.t1
Lsat_s017.g0017.t1
Lsat_s017.g0018.t1GLYCOPROTEIN HORMONE ALPHA-2
Lsat_s017.g0019.t1
Lsat_s017.g0020.t1
Lsat_s017.g0021.t1PROTEIN PHOSPHATASE 4 REGULATORY SUBUNIT 4 PPP4R4
Lsat_s017.g0022.t1HOMEOBOX PROTEIN TRANSCRIPTION FACTORS
Lsat_s017.g0023.t1PROTEIN PHOSPHATASE 4 REGULATORY SUBUNIT 4 PPP4R4
Lsat_s017.g0024.t1ZINC FINGER PROTEIN
Lsat_s017.g0025.t1CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED
Lsat_s017.g0026.t1
Lsat_s017.g0027.t1
Lsat_s017.g0028.t1
Lsat_s017.g0029.t1
Lsat_s017.g0030.t1
Lsat_s017.g0031.t1
Lsat_s017.g0032.t1
Lsat_s017.g0033.t1
Lsat_s017.g0034.t1HOMEOBOX PROTEIN
Lsat_s017.g0035.t1
Lsat_s017.g0036.t1HOMEOBOX PROTEIN ARISTALESS
Lsat_s017.g0037.t1ADP-DEPENDENT GLUCOKINASE
Lsat_s017.g0038.t1ATP-DEPENDENT RNA HELICASE
Lsat_s017.g0039.t1HEMOGLOBINASE FAMILY MEMBER
Lsat_s017.g0040.t1ISTHMIN-2
Lsat_s017.g0041.t1
Lsat_s017.g0042.t1ALDOSE-1-EPIMERASE
Lsat_s017.g0043.t1MATRIN 3/NUCLEAR PROTEIN 220-RELATED
Lsat_s017.g0044.t1UNCHARACTERIZED
Lsat_s017.g0045.t1TUBULIN POLYGLUTAMYLASE
Lsat_s017.g0046.t1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Lsat_s017.g0047.t1
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