About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia satsuma (Species)

Original Name

Lamellibrachia satsuma Miura, 1997

Key Reference Paper

1. Miura T. Lamellibrachia satsuma, a new species of vestimentiferan worms (Annelida: Pogonophora) from a shallow hydrothermal vent in Kagoshima Bay, Japan[J]. Proceedings of the Biological Society of Washington, 1997, 110: 447-456. (Miura et al., 1997)

Distribution

The species has been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m (3,840 ft) depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50 8,074/6,60040.2-27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s006.g0031.t1BRCA1-ASSOCIATED ATM ACTIVATOR 1
Lsat_s006.g0032.t1WD-40 REPEAT PROTEIN
Lsat_s006.g0033.t1CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED
Lsat_s006.g0034.t1UPF0193 PROTEIN EVG1
Lsat_s006.g0035.t1ACYL-COENZYME A SYNTHETASE
Lsat_s006.g0036.t1-
Lsat_s006.g0037.t1ACYL-COENZYME A SYNTHETASE
Lsat_s006.g0038.t1ACYL-COENZYME A SYNTHETASE
Lsat_s006.g0039.t1UNKEMPT FAMILY MEMBER
Lsat_s006.g0040.t1-
Lsat_s006.g0041.t1PROTEIN CCSMST1
Lsat_s006.g0042.t1PROKARYOTIC DNA TOPOISOMERASE
Lsat_s006.g0043.t1-
Lsat_s006.g0044.t1PROTEIN FAM227B
Lsat_s006.g0045.t1SERINE HYDROXYMETHYLTRANSFERASE
Lsat_s006.g0046.t1BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR
Lsat_s006.g0047.t1WD40 REPEAT DOMAIN 95
Lsat_s006.g0048.t1INORGANIC PYROPHOSPHATASE
Lsat_s006.g0049.t1TRANSCRIPTION FACTOR 7 FAMILY MEMBER
Lsat_s006.g0050.t1-
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