About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides02804-
Paelopatides02805-
Paelopatides02806-
Paelopatides02807-
Paelopatides02808-
Paelopatides02809-
Paelopatides02810AAA DOMAIN-CONTAINING
Paelopatides02811UNCHARACTERIZED
Paelopatides02812PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides02813ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides02814ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides02815TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides02816BUCENTAUR RELATED
Paelopatides02817REVERSE TRANSCRIPTASES
Paelopatides02818REVERSE TRANSCRIPTASE
Paelopatides02819TYROSINE-PROTEIN KINASE RECEPTOR
Paelopatides02820ENDONUCLEASE
Paelopatides02821-
Paelopatides02822ANAPHASE PROMOTING COMPLEX SUBUNIT 4 APC4
Paelopatides02823E3 UBIQUITIN-PROTEIN LIGASE TRIM
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