About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides02844-
Paelopatides02845-
Paelopatides0284640S RIBOSOMAL PROTEIN S25
Paelopatides02847ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 13B
Paelopatides02848REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides02849-
Paelopatides02850ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides02851PROTEIN CBG26694
Paelopatides02852PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides02853ENZYMATIC POLYPROTEIN-RELATED
Paelopatides02854D-2-HYDROXYGLUTARATE DEHYDROGENASE, MITOCHONDRIAL
Paelopatides02855-
Paelopatides02856BUCENTAUR RELATED
Paelopatides02857REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides02858BUCENTAUR RELATED
Paelopatides02859REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides02860REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides02861PROTEIN CBG26694
Paelopatides02862ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides02863-
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