About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides02904CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides02905-
Paelopatides02906TYROSINE-PROTEIN KINASE
Paelopatides02907DUF3504 DOMAIN-CONTAINING PROTEIN
Paelopatides02908-
Paelopatides02911RETROTRANSPOSON
Paelopatides02912LEUCOKININ RECEPTOR-RELATED
Paelopatides02913SODIUM-BILE ACID COTRANSPORTER
Paelopatides02914E3 UBIQUITIN-PROTEIN LIGASE MYCBP2
Paelopatides02915E3 UBIQUITIN-PROTEIN LIGASE MYCBP2
Paelopatides02916-
Paelopatides02917POL PROTEIN
Paelopatides02918ENDONUCLEASE-RELATED
Paelopatides02919TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides02920-
Paelopatides02921CADHERIN-23
Paelopatides02922-
Paelopatides02923SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides02924CXXC-TYPE ZINC FINGER PROTEIN 1
Paelopatides02925ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
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