About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides02968-
Paelopatides02969-
Paelopatides02972FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides02973-
Paelopatides02974-
Paelopatides02975-
Paelopatides02976DNA2/NAM7 HELICASE FAMILY
Paelopatides02977ENOYL-COA HYDRATASE
Paelopatides02978BEIGE/BEACH-RELATED
Paelopatides02979-
Paelopatides02980ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides02981PROTEIN CBG26694
Paelopatides02982-
Paelopatides02983-
Paelopatides02984TRANSPOSABLE ELEMENT-RELATED
Paelopatides02985PROTEIN ENHANCER OF SEVENLESS 2B
Paelopatides02988EXPRESSED PROTEIN
Paelopatides02989CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
Paelopatides02990PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides02991PHD-TYPE DOMAIN-CONTAINING PROTEIN
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