About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides02864CALSYNTENIN
Paelopatides02865PROTEIN CBG26694
Paelopatides02866PROTEIN CBG26694
Paelopatides02867CALSYNTENIN
Paelopatides02868PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED
Paelopatides02869CALSYNTENIN
Paelopatides02870PROTEIN CBG26694
Paelopatides02871-
Paelopatides02872VACUOLAR SORTING PROTEIN 35
Paelopatides02873-
Paelopatides02874TRANSMEMBRANE PROTEIN 64
Paelopatides02875-
Paelopatides02876PQ-LOOP REPEAT-CONTAINING PROTEIN 1-LIKE PROTEIN
Paelopatides02877PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT
Paelopatides02878-
Paelopatides02879ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides02880PROTEIN CBG26694
Paelopatides02881ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides02882-
Paelopatides02883CXXC-TYPE ZINC FINGER PROTEIN 1
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