About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides02743FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides02744ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides02745PROTEIN CBG26694
Paelopatides02746ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides02747EPIDERMAL GROWTH FACTOR RECEPTOR KINASE SUBSTRATE EPS8-RELATED PROTEIN
Paelopatides02748-
Paelopatides02749EPIDERMAL GROWTH FACTOR RECEPTOR KINASE SUBSTRATE EPS8-RELATED PROTEIN
Paelopatides02750SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides02751-
Paelopatides02752ENDONUCLEASE-RELATED
Paelopatides02753PROTEIN CBG26694
Paelopatides02754GABA-B RECEPTOR
Paelopatides02755-
Paelopatides02756-
Paelopatides02757-
Paelopatides02758L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides02759TYROSINE-PROTEIN KINASE
Paelopatides02760-
Paelopatides02761-
Paelopatides02762PYRUVATE DEHYDROGENASE KINASE
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