About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides02617-
Paelopatides02618SELENOPROTEIN O
Paelopatides02619-
Paelopatides02621-
Paelopatides02622REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides02623-
Paelopatides02624-
Paelopatides02625AGAP009604-PA
Paelopatides02626REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides02627-
Paelopatides02628BARRIER TO AUTOINTEGRATION FACTOR 2
Paelopatides02629CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides02630CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides02631RETROTRANSPOSON
Paelopatides02632-
Paelopatides02633PROTEIN CBG26694
Paelopatides02634PROTEIN CBG26694
Paelopatides02635PROTEIN CBG26694
Paelopatides02636PROTEIN CBG26694
Paelopatides02637-
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