About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides02533-
Paelopatides02534-
Paelopatides02535-
Paelopatides02537FATTY ACID SYNTHASE
Paelopatides02538PREFOLDIN SUBUNIT 6
Paelopatides02539-
Paelopatides02540REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides02541SURFEIT LOCUS PROTEIN
Paelopatides02542SURFEIT LOCUS PROTEIN
Paelopatides02543-
Paelopatides02544REVERSE TRANSCRIPTASES
Paelopatides02545L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides02546FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS
Paelopatides02549REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides02551MEMBRANE-BOUND LYTIC MUREIN TRANSGLYCOSYLASE F
Paelopatides02552ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides02553FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides02554FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides02555LYSOSOMAL COBALAMIN TRANSPORTER-RELATED
Paelopatides02556-
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