About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides02597ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides02598CDC37-RELATED
Paelopatides02599REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides02600LAR INTERACTING PROTEIN LIP -RELATED PROTEIN
Paelopatides02601-
Paelopatides02602-
Paelopatides02603PEFLIN
Paelopatides02604REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides02605-
Paelopatides02606PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER
Paelopatides02607PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides02608-
Paelopatides02609PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides02610-
Paelopatides02611PROTEIN CBG26694
Paelopatides02612APOPTOSIS INHIBITOR 5-RELATED
Paelopatides02613APOPTOSIS INHIBITOR 5-RELATED
Paelopatides02614INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides02615-
Paelopatides02616-
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