About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides02468-
Paelopatides02469ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides02470ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides02471RETROTRANSPOSON
Paelopatides02472ENZYMATIC POLYPROTEIN-RELATED
Paelopatides02473CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides02474-
Paelopatides02475ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides02476-
Paelopatides02477SI:CH211-262H13.3-RELATED-RELATED
Paelopatides02478REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides02479-
Paelopatides02480-
Paelopatides02481FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides02482-
Paelopatides02483SH3 MULTIPLE DOMAIN
Paelopatides02484UNCHARACTERIZED
Paelopatides02485SOLUTE CARRIER FAMILY 35
Paelopatides02486VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL
Paelopatides02487-
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