About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides02361CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides02362-
Paelopatides02363-
Paelopatides02364-
Paelopatides023651-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED
Paelopatides02366-
Paelopatides02367FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides02368ALPHA-2,8-SIALYLTRANSFERASE
Paelopatides02369SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS
Paelopatides02372DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED
Paelopatides02373-
Paelopatides02374IFT140/172-RELATED
Paelopatides02375PROTEIN CBG26694
Paelopatides02376ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides02377ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides02378-
Paelopatides02379ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides02380PROTEIN BARK BEETLE
Paelopatides02381-
Paelopatides02382-
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