About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides02235UNCHARACTERIZED
Paelopatides02236-
Paelopatides02237MULTI-COPPER OXIDASE
Paelopatides02238-
Paelopatides02239-
Paelopatides02240-
Paelopatides02241FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides02242-
Paelopatides02243HISTONE ACETYLTRANSFERASE TYPE B CATALYTIC SUBUNIT
Paelopatides02244L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides02245ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides02246OS05G0310600 PROTEIN
Paelopatides02247-
Paelopatides02248F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides02249PROTEIN, PUTATIVE-RELATED
Paelopatides02250ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides02251DUMPY: SHORTER THAN WILD-TYPE
Paelopatides02252SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B
Paelopatides02253SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B
Paelopatides02254PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
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