About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides0211250S RIBOSOMAL PROTEIN L21
Paelopatides02113CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides02114-
Paelopatides02115MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides02116PROTEIN CBG26694
Paelopatides02117ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides02118DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Paelopatides02121BONUS, ISOFORM C-RELATED
Paelopatides02122TRANSPOSON
Paelopatides02123BONUS, ISOFORM C-RELATED
Paelopatides02124-
Paelopatides02125XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER
Paelopatides02126-
Paelopatides02127-
Paelopatides02128-
Paelopatides02129-
Paelopatides02130-
Paelopatides02131-
Paelopatides02132-
Paelopatides02133-
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