About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides02072NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides02073-
Paelopatides02074REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides02075ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
Paelopatides02076TETRATRICOPEPTIDE REPEAT PROTEIN 29
Paelopatides02077CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides02078-
Paelopatides02079-
Paelopatides02080DUF3504 DOMAIN-CONTAINING PROTEIN
Paelopatides02081ANKYRIN REPEAT AND MYND DOMAIN-CONTAINING PROTEIN 2
Paelopatides02082ANKYRIN REPEAT PROTEIN
Paelopatides02083-
Paelopatides02084TRNA METHYLTRANSFERASE
Paelopatides02085DNAJ HOMOLOG SUBFAMILY C MEMBER 5 HOMOLOG
Paelopatides02086-
Paelopatides02087-
Paelopatides02088NETRIN/LAMININ-RELATED
Paelopatides02089UNCHARACTERIZED
Paelopatides02090-
Paelopatides02091PROTEIN CBG26694
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