About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides02030MATRIX METALLOPROTEINASE
Paelopatides02031G-PROTEIN COUPLED RECEPTOR
Paelopatides02032-
Paelopatides02033SLEI FAMILY PROTEIN
Paelopatides02034PROTEIN CBG26694
Paelopatides02035-
Paelopatides02036-
Paelopatides02037GLYCOSYLTRANSFERASE-LIKE 1
Paelopatides02038GAG-RELATED PROTEIN
Paelopatides02039TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides02040REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides02041SPERMINE SYNTHASE
Paelopatides02043-
Paelopatides02044-
Paelopatides02045-
Paelopatides02046-
Paelopatides02047RETROTRANSPOSON
Paelopatides02048ANTIGEN BSP, PUTATIVE-RELATED
Paelopatides02049ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides02050HOMEOBOX PROTEIN NKX
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