About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides02134-
Paelopatides02135DENN DOMAIN-CONTAINING PROTEIN 4
Paelopatides02136REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides02137-
Paelopatides02138BUCENTAUR RELATED
Paelopatides02139REVERSE TRANSCRIPTASES
Paelopatides02140ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides02141ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides02142CARBOHYDRATE SULFOTRANSFERASE 15
Paelopatides02143-
Paelopatides02144-
Paelopatides02145LIMKAIN B LKAP
Paelopatides02146-
Paelopatides02147CYSTEINE PROTEASE FAMILY C1-RELATED
Paelopatides02148BETA-CAROTENE DIOXYGENASE
Paelopatides02149-
Paelopatides02150CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides02151-
Paelopatides02152-
Paelopatides02153NETRIN RECEPTOR UNC5
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