About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides02384ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides02385-
Paelopatides02388-
Paelopatides02389ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides02390POL PROTEIN
Paelopatides02391BRG-1 ASSOCIATED FACTOR 250 BAF250
Paelopatides02392INTERFERON ALPHA-INDUCIBLE PROTEIN 27
Paelopatides02393-
Paelopatides02394PEPTIDASE S8
Paelopatides02395L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides02396-
Paelopatides02397TYROSINE-PROTEIN KINASE
Paelopatides02398CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides02399REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides02400REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides02401POL PROTEIN
Paelopatides02402ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides02403UNCHARACTERIZED
Paelopatides02404NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides02405BUCENTAUR RELATED
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