About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides02341SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides02342ZGC:195170
Paelopatides02343PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides02344MACROGLOBULIN / COMPLEMENT
Paelopatides02345SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
Paelopatides02346SYNAPTIC ADHESION-LIKE MOLECULE SALM
Paelopatides02347-
Paelopatides02348REVERSE TRANSCRIPTASE
Paelopatides02349-
Paelopatides02350-
Paelopatides02351-
Paelopatides02352INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides02353COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 2/NUR77
Paelopatides02354CALCITONIN GENE-RELATED PEPTIDE-RECEPTOR COMPONENT PROTEIN
Paelopatides02355-
Paelopatides02356-
Paelopatides02357-
Paelopatides02358FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides02359-
Paelopatides02360WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED
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