About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides02406PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides02408-
Paelopatides02409-
Paelopatides02410CAS SCAFFOLDING PROTEIN
Paelopatides02411-
Paelopatides02412NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides02413PROTEIN CBG26694
Paelopatides02414PROTEIN CBG26694
Paelopatides02415PROTEIN CBG26694
Paelopatides02416SI:CH211-196P9.1-RELATED
Paelopatides02417PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides02418PROTEIN CBG11839-RELATED
Paelopatides02419SH2-SH3 ADAPTOR PROTEIN-RELATED
Paelopatides02420POLYGALACTURONASE 1 BETA-LIKE PROTEIN 2
Paelopatides02421ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides02422POL PROTEIN
Paelopatides02423-
Paelopatides02424ADHESION G PROTEIN-COUPLED RECEPTOR G7
Paelopatides02425CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides02426PR DOMAIN ZINC FINGER PROTEIN
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