About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides02763-
Paelopatides02764-
Paelopatides02765L-THREONINE 3-DEHYDROGENASE
Paelopatides02766PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides02767ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides02768L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides02769TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
Paelopatides02770E3 UBIQUITIN-PROTEIN LIGASE RAD18
Paelopatides02771-
Paelopatides02772-
Paelopatides02773CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides02774REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides02775ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides02776FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides02777CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides02778EPM2A-INTERACTING PROTEIN 1
Paelopatides02779BCL-2 RELATED
Paelopatides02780RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides02781RHO-GTPASE-ACTIVATING PROTEIN LRG1
Paelopatides02782-
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