About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides02698HEPARAN SULFATE 2-O-SULFOTRANSFERASE
Paelopatides02699SULFOTRANSFERASE SULT
Paelopatides02700HIV-1 REV BINDING PROTEIN 2, 3
Paelopatides02701-
Paelopatides02702FI04643P-RELATED
Paelopatides02703FI04643P-RELATED
Paelopatides02704EPH RECEPTOR A5
Paelopatides02705-
Paelopatides02706S -2-HYDROXY-ACID OXIDASE-RELATED
Paelopatides02707TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides02708ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides02709DIMETHYLANILINE MONOOXYGENASE
Paelopatides02710PROTEIN CBG26694
Paelopatides02711REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides02712-
Paelopatides02713L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides02714PROTEIN CBG26694
Paelopatides02715ENDONUCLEASE-RELATED
Paelopatides02716-
Paelopatides02717L-GULONOLACTONE OXIDASE
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