About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides02824ANKYRIN REPEAT AND LEM DOMAIN-CONTAINING PROTEIN 2
Paelopatides02825ATP-BINDING CASSETTE SUB-FAMILY C
Paelopatides02826-
Paelopatides02827INTERFERON-INDUCED PROTEIN WITH TETRATRICOPEPTIDE REPEATS
Paelopatides02828-
Paelopatides02829ZINC FINGER PROTEIN
Paelopatides02830PROTEIN CBG26694
Paelopatides02831-
Paelopatides02832-
Paelopatides02833ENDONUCLEASE-RELATED
Paelopatides02834RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN
Paelopatides02835PROTEIN CBG10425
Paelopatides02836-
Paelopatides02837RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR
Paelopatides02838ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides02839BCL-2 RELATED
Paelopatides02840SERINE/THREONINE-PROTEIN KINASE 19
Paelopatides02841CDC42 GTPASE-ACTIVATING PROTEIN
Paelopatides02842-
Paelopatides02843E3 UBIQUITIN-PROTEIN LIGASE RING1 / RING 2 FAMILY MEMBER
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