About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS06301
HS06302UNCHARACTERIZED
HS06303IMMEDIATE EARLY RESPONSE 3
HS06304REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS06305TYROSINE-PROTEIN KINASE RECEPTOR
HS06306LYSYL OXIDASE-LIKE-RELATED
HS06307SYNPHILIN-1
HS06308RING FINGER PROTEIN 214
HS06309SORTING NEXIN
HS06310ZONA PELLUCIDA SPERM-BINDING PROTEIN
HS06311REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS06312PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
HS06313PR DOMAIN ZINC FINGER PROTEIN
HS06314GTPASE, IMAP FAMILY MEMBER-RELATED
HS06315UNCHARACTERIZED
HS06316BRAKELESS PROTEIN
HS06317GRAM DOMAIN-CONTAINING PROTEIN 2B-RELATED
HS06318SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS
HS06319NUDIX HYDROLASE, NUDC SUBFAMILY
HS06320MEMBER OF THE HIR1 FAMILY OF WD-REPEAT PROTEINS
HS06321-
HS06322TETRATRICOPEPTIDE REPEAT PROTEIN 16
HS06323FIVE-SPAN TRANSMEMBRANE PROTEIN M83
HS06324ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
HS06325PROTEIN FAM163B MEMBER
HS06326AGAP009604-PA
HS06327AGAP009604-PA
HS06328AGAP009604-PA
HS06329AGAP009604-PA
HS06330PEPTIDYL-TRNA HYDROLASE
HS06331TORSIN
HS06332BREAST CANCER ANTI-ESTROGEN RESISTANCE PROTEIN 3 HOMOLOG-LIKE PROTEIN
HS06333EG:EG0003.4 PROTEIN-RELATED
HS06334TGF-BETA FAMILY
HS06335CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 299
HS06336
HS06337AGAP007109-PA
HS06338ANTHRAX TOXIN RECEPTOR
HS06339REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS06340AP ENDONUCLEASE
HS06341ADIPOR/PROGESTIN RECEPTOR-RELATED
HS06342PROTEIN KINASE DOMAIN-CONTAINING PROTEIN
HS06343PROTEIN KINASE DOMAIN-CONTAINING PROTEIN
HS06344ANNEXIN
HS06345MATRIX PROTEIN, PUTATIVE-RELATED
HS06346CARBON CATABOLITE REPRESSOR PROTEIN 4
HS0634754S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL
HS06348FAMILY WITH SEQUENCE SIMILARITY 102
HS06349SOLUTE CARRIER FAMILY 25
HS06350RIBOSOMAL PROTEIN S6 KINASE
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