About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS06051ATPASES OF THE PP SUPERFAMILY-RELATED
HS06052PAXILLIN-RELATED
HS06053
HS06054E3 UBIQUITIN-PROTEIN LIGASE PRAJA
HS06055FASTING-INDUCIBLE INTEGRAL MEMBRANE PROTEIN TM6P1-RELATED
HS06056VOLTAGE-GATED POTASSIUM CHANNEL
HS06057ATP SYNTHASE E CHAIN, MITOCHONDRIAL
HS06058ALPHA-L-IDURONIDASE
HS06059ANKYRIN REPEAT-CONTAINING
HS06060SI:CH211-262H13.3-RELATED-RELATED
HS06061PHOSPHOGLYCERATE MUTASE-RELATED
HS06062ANKYRIN REPEAT AND LEM DOMAIN-CONTAINING PROTEIN 2
HS06063NUCLEAR MITOTIC APPARATUS PROTEIN 1-RELATED
HS06064
HS06065UBIQUITIN LIGASE PROTEIN CHFR
HS06066FIBROSIN FAMILY MEMBER
HS06067N-ACETYLGALACTOSAMINYLTRANSFERASE
HS06068AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED
HS060695-HYDROXYTRYPTAMINE RECEPTOR
HS06070EUKARYOTIC TRANSLATION INITIATION FACTOR 2C
HS06071ANKYRIN REPEAT AND LEM DOMAIN-CONTAINING PROTEIN 2
HS06072RAN BINDING PROTEIN
HS06073TRNA (URACIL-5-)-METHYLTRANSFERASE
HS06074MICRORNA PROCESSOR COMPLEX SUBUNIT DGCR8
HS06075
HS06076SER/THR-RICH PROTEIN T10 IN DGCR REGION
HS06077PLAKOPHILLIN-RELATED
HS06078GLUTATHIONE REDUCTASE
HS06079TRANSDUCIN BETA-LIKE 3
HS06080T-BOX PROTEIN-RELATED
HS06081SEMAPHORIN
HS06082ANTIGEN KI-67-LIKE PROTEIN
HS06083HISTONE ACETYLTRANSFERASE
HS06084
HS06085AP COMPLEX SUBUNIT MU
HS06086UNCHARACTERIZED
HS06087NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
HS06088HEXOKINASE
HS06089BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
HS06090ADDUCIN
HS06091U4/U6.U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 27 KDA PROTEIN
HS06092MAX DIMERIZATION, MAD
HS06093
HS06094GLIAL FIBRILLARY ACIDIC PROTEIN
HS06095PHOSPHATIDATE CYTIDYLYLTRANSFERASE
HS06096SPERMATHECAL PHYSIOLOGY VARIANT
HS06097TGF-BETA FAMILY
HS06098STEROL DESATURASE
HS06099ERLIN (ER LIPID RAFT ASSOCIATED PROTEIN) HOMOLOG
HS06100ZINC-FINGER PROTEIN NOLZ1-RELATED
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