About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS06101EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G
HS06102RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1
HS06103LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED
HS06104SMAD
HS06105UNCHARACTERIZED
HS061063-HYDROXYACYL-THIOESTER DEHYDRATASE HTDX-RELATED
HS06107ZINC FINGER AND BTB DOMAIN-CONTAINING
HS06108PARALEMMIN-RELATED
HS06109SUSHI DOMAIN-CONTAINING PROTEIN 1
HS06110SI:CH211-243P7.3-RELATED
HS06111GUANYLYL CYCLASE DOMAIN CONTAINING PROTEIN 1 GUCD1
HS06112NITRILASE C965.09-RELATED
HS06113OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
HS06114
HS06115CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED
HS06116BREAKPOINT CLUSTER REGION PROTEIN BCR
HS06117INTRAFLAGELLAR TRANSPORT PROTEIN 81 HOMOLOG
HS06118CALCIUM-TRANSPORTING ATPASE
HS06119CELL DIVISION CYCLE 16,23,27
HS06120UBIQUITIN-CONJUGATING ENZYME E2
HS06121FAMILY WITH SEQUENCE SIMILARITY 216 MEMBER A
HS06122DNA REPAIR PROTEIN RAD9
HS06123PROTEIN PHOSPHATASE 2C
HS06124SERINE/THREONINE PROTEIN PHOSPHATASE
HS06125
HS06126MYOSIN REGULATORY LIGHT CHAIN 2
HS06127CCAAT DISPLACEMENT PROTEIN-RELATED
HS06128TRANSPOSON TY3-I GAG-POL POLYPROTEIN
HS06129MYOTUBULARIN-RELATED
HS06130MYOTONIC DYSTROPHY S/T KINASE-RELATED
HS06131MYOTONIC DYSTROPHY S/T KINASE-RELATED
HS06132BICD FAMILY-LIKE CARGO ADAPTER
HS06133RAS-RELATED PROTEIN RAB
HS06134TRANSLATIONAL ACTIVATOR GCN1-RELATED
HS06135
HS06136
HS06137SYNAPTOBREVIN FAMILY MEMBER
HS06138CONDENSIN COMPLEX SUBUNIT 2
HS06139G-PROTEIN COUPLED RECEPTOR TKR-1-RELATED
HS06140TETRASPANIN
HS061412-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2
HS06142ENDONUCLEASE-RELATED
HS06143ZINC FINGER PROTEIN
HS06144TRANSCRIPTIONAL REPRESSOR PROTEIN YY
HS06145ZINC FINGER AND SCAN DOMAIN-CONTAINING
HS06146ZINC FINGER AND SCAN DOMAIN-CONTAINING
HS06147ZINC FINGER PROTEIN
HS06148
HS06149ZINC FINGER AND SCAN DOMAIN-CONTAINING
HS06150ODD-SKIPPED - RELATED
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