About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS05951TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
HS05952
HS05953UNCHARACTERIZED
HS05954SERINE PROTEASE INHIBITOR, SERPIN
HS05955BCL2-ASSOCIATED ATHANOGENE
HS05956LSM1
HS05957G PROTEIN-COUPLED RECEPTOR KINASE/RIBOSOMAL PROTEIN S6 KINASE
HS05958STEROIDOGENIC ACUTE REGULATORY PROTEIN, MITOCHONDRIAL
HS05959ENGULFMENT AND CELL MOTILITY
HS05960PROTEASE M14 CARBOXYPEPTIDASE
HS05961DNA POLYMERASE DELTA SUBUNIT 2
HS05962RNA RECOGNITION MOTIF-CONTAINING
HS05963NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1
HS05964CYTOSOLIC REGULATOR PIANISSIMO
HS05965ZGC:153352
HS05966SI:DKEY-19B23.11-RELATED
HS05967CASPASE REGULATOR, RING FINGER DOMAIN-CONTAINING
HS05968PHD/F-BOX CONTAINING PROTEIN
HS05969CALCIUM RELEASE-ACTIVATED CALCIUM CHANNEL PROTEIN 1
HS05970HISTONE-LYSINE N-METHYLTRANSFERASE SETD1
HS05971
HS059724-HYDROXYPHENYLPYRUVATE DIOXYGENASE
HS05973CELL ADHESION MOLECULE
HS05974RAB GTPASE-ACTIVATING PROTEIN 1-LIKE
HS05975SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED
HS05976COILED-COIL DOMAIN-CONTAINING PROTEIN 157
HS05977INNER MEMBRANE TRANSPORTER YGJI-RELATED
HS05978DIGEORGE SYNDROME CRITICAL REGION 6 DGCR6 FAMILY MEMBER
HS05979RAS GTPASE-ACTIVATING PROTEINS
HS05980DELTEX-RELATED
HS05981ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
HS05982PHOSPHATE TRANSPORTER
HS05983TRANSCRIPTION COFACTOR VESTIGIAL-LIKE PROTEIN 4
HS05984SYNAPSIN
HS05985UNCHARACTERIZED
HS05986RAB GDP/GTP EXCHANGE FACTOR
HS05987HOMEOBOX PROTEIN TRANSCRIPTION FACTORS
HS05988MULTIVESICULAR BODY SUBUNIT 12B
HS05989LIM/HOMEOBOX PROTEIN LHX
HS05990AGAP004733-PA
HS05991FIBRINOGEN/TENASCIN/ANGIOPOEITIN
HS05992CONTACTIN 5
HS05993CALCIUM BINDING PROTEINS
HS05994ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
HS05995CARNITINE O-ACYLTRANSFERASE
HS05996IMMEDIATE EARLY RESPONSE GENE
HS05997POTE ANKYRIN DOMAIN
HS05998UNCHARACTERIZED
HS05999OLIGOPEPTIDE TRANSPORTER-RELATED
HS06000-
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