About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS05801P300 TRANSCRIPTIONAL COFACTOR JMY-RELATED
HS05802BETAINE--HOMOCYSTEINE S-METHYLTRANSFERASE 1
HS05803DIMETHYLADENOSINE TRANSFERASE
HS05804KINESIN-RELATED PROTEIN 6
HS05805FI21225P1
HS05806ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN
HS05807TRANSMEMBRANE PROTEIN 2-RELATED
HS05808TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
HS05809KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS05810-
HS05811CHYMOTRYPSIN-LIKE ELASTASE FAMILY MEMBER
HS05812BETA-CAROTENE DIOXYGENASE
HS05813GDNF RECEPTOR ALPHA
HS05814ZIPPER PUTATIVE TUMOR SUPPRESSOR 2 HOMOLOG-LIKE PROTEIN-RELATED
HS05815INTRAFLAGELLAR TRANSPORT PROTEIN 25 HOMOLOG
HS05816SURVIVAL MOTOR NEURON-LIKE PROTEIN 1
HS05817ENDONUCLEASE-RELATED
HS05818ANILLIN/RHOTEKIN RTKN
HS05819METALLO-BETA-LACTAMASE DOMAIN-CONTAINING
HS05820DNA-DIRECTED RNA POLYMERASE III
HS05821LYSM AND PUTATIVE PEPTIDOGLYCAN-BINDING DOMAIN-CONTAINING PROTEIN
HS05822ADHESION G-PROTEIN COUPLED RECEPTOR V1
HS05823ARRESTIN DOMAIN CONTAINING PROTEIN
HS05824ARYLSULFATASE K
HS05825SUPERKILLER 3 PROTEIN-RELATED
HS05826UNCHARACTERIZED
HS05827GIG2-LIKE PROTEIN DRED-RELATED
HS05828
HS05829C2 DOMAIN-CONTAINING PROTEIN
HS05830SMC5-SMC6 COMPLEX LOCALIZATION FACTOR PROTEIN 1
HS05831SIMILAR TO KIAA0825 PROTEIN
HS05832UNCHARACTERIZED
HS05833NUCLEAR HORMONE RECEPTOR
HS05834REGULATOR OF CHROMOSOME CONDENSATION
HS05835ARRESTIN DOMAIN CONTAINING PROTEIN
HS05836ARRESTIN DOMAIN CONTAINING PROTEIN
HS05837ORGANIC SOLUTE TRANSPORTER SUBUNIT BETA-RELATED
HS05838AQUAPORIN OR AQUAGLYCEROPORIN RELATED
HS05839NUCLEOLAR RNA-ASSOCIATED PROTEIN
HS05840DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A
HS05841PHOSPHOLIPASE A-2-ACTIVATING PROTEIN
HS05842RHO FAMILY GTPASE
HS05843CORTACTIN AND DREBRIN
HS05844SERUM RESPONSE FACTOR HOMOLOG
HS05845RE42071P
HS05846
HS05847CYCLIN
HS05848RAS GTPASE-ACTIVATING PROTEINS
HS05849CYTOCHROME C OXIDASE SUBUNIT VIIC
HS05850F5/8 TYPE C DOMAIN-CONTAINING PROTEIN
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