About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS05501SYNAPTOTAGMIN
HS05502CALBINDIN
HS05503METHYLTHIOADENOSINE/PURINE NUCLEOSIDE PHOSPHORYLASE
HS05504DLEC1 DELETED IN LUNG AND ESOPHAGEAL CANCER 1
HS05505EF-HAND DOMAIN-CONTAINING PROTEIN
HS05506AMINO ACID TRANSPORTER
HS05507PEPTIDASE S8
HS05508SERINE/THREONINE-PROTEIN KINASE
HS05509NEURITIN-RELATED
HS05510TRANSLIN-ASSOCIATED FACTOR X-INTERACTING PROTEIN 1
HS05511ENHANCER OF MRNA-DECAPPING PROTEIN 4
HS05512NUCLEAR TRANSPORT FACTOR 2
HS05513RAN BINDING PROTEIN 9-RELATED
HS05514DET1 HOMOLOG DE-ETIOLATED-1 HOMOLOG
HS05515MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED
HS05516
HS05517ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN
HS05518GH28348P
HS05519KELCH DOMAIN-CONTAINING PROTEIN
HS05520AMINO ACID TRANSPORTER
HS05521
HS05522CARBONIC ANHYDRASE
HS05523UBIQUITIN-ACTIVATING ENZYME E1
HS05524LECITHIN-CHOLESTEROL ACYLTRANSFERASE-RELATED
HS05525LECITHIN-CHOLESTEROL ACYLTRANSFERASE-RELATED
HS05526UNCHARACTERIZED
HS05527IP01015P-RELATED
HS05528FATTY ACID HYDROXYLASE
HS05529ANOCTAMIN
HS05530MAP/MICROTUBULE AFFINITY-REGULATING KINASE
HS05531
HS05532UBIQUITIN-PROTEIN LIGASE E3A-RELATED
HS05533UBIQUITIN-PROTEIN LIGASE E3A-RELATED
HS05534KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS05535COILED-COIL DOMAIN-CONTAINING PROTEIN 73
HS05536DEP DOMAIN-CONTAINING
HS05537TESTIS-SPECIFIC PROTEIN PBS13 T-COMPLEX 11
HS05538DUAL SPECIFICITY PROTEIN KINASE
HS05539UNCHARACTERIZED
HS05540REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS05541REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS05542SPONDIN
HS05543REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS05544SYNAPTOTAGMIN
HS05545SEPTIN
HS05546UNCHARACTERIZED
HS05547TRANSPOSON TY3-I GAG-POL POLYPROTEIN
HS05548ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
HS05549TRANSPOSON TY3-I GAG-POL POLYPROTEIN
HS05550OLFACTOMEDIN-RELATED
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